MARA results: cerebellum, embryo E18, biol

Sample name: cerebellum, embryo E18, biol_rep3 (E18R3)

Sorted Z-values histogram for the sample cerebellum, embryo E18, biol_rep3 (E18R3)

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
HOX{A6,A7,B6,B7}.p2	5.742	Hoxb6 Hoxa7 Hoxb7 Hoxa6
MYFfamily.p2	4.304	Myod1 Myf6 Myf5 Myog
UGUGCUU	3.893
FOXQ1.p2	3.797	Foxq1
GTF2I.p2	3.757	Gtf2i
FOXL1.p2	3.354	Foxl1
KLF12.p2	2.906	Klf12
EVI1.p2	2.871	Mecom
NFE2L1.p2	2.811	Nfe2l1
REST.p3	2.757	Rest
HOX{A4,D4}.p2	2.637	Hoxa4 Hoxd4
NKX2-2,8.p2	2.552	Nkx2-2 Nkx2-9
ZFP161.p2	2.451	Zfp161
JUN.p2	2.435	Jun Jund Junb
AHR_ARNT_ARNT2.p2	2.363	Arnt Ahr Arnt2
TCF4_dimer.p2	2.247	Tcf4
EN1,2.p2	2.155	En1 En2
RREB1.p2	2.109	Rreb1
ONECUT1,2.p2	2.100	Onecut2 Onecut1
ETS1,2.p2	2.043	Ets2 Ets1
ARID5B.p2	2.035	Arid5b
MZF1.p2	2.027	Mzf1
MAFB.p2	1.971	Mafb
SMAD1..7,9.p2	1.930	Smad5 Smad1 Smad3 Smad4 Smad2 Smad6 Smad7 Smad9
ZEB1.p2	1.918	Zeb1
UGCAUAG	1.904
DBP.p2	1.711	Dbp
TBX4,5.p2	1.675	Tbx5 Tbx4
SRY.p2	1.661	Sry
ZNF384.p2	1.634	Zfp384
MYOD1.p2	1.629	Myod1
TFDP1.p2	1.573	Tfdp1
GLI1..3.p2	1.563	Gli1 Gli2 Gli3
ZBTB6.p2	1.528	Zbtb6
SPIB.p2	1.528	Spib
TLX1..3_NFIC{dimer}.p2	1.495	Tlx1 Tlx3	$logo of TLX1..3_NFIC{dimer}.p2$
RUNX1..3.p2	1.489	Runx1 Runx3 Runx2
IRF1,2,7.p3	1.469	Irf1 Irf2 Irf7
SNAI1..3.p2	1.450	Snai2 Snai1 Snai3
SOX5.p2	1.403	Sox5
POU6F1.p2	1.392	Pou6f1
GCUGGUG	1.301
BPTF.p2	1.261	Bptf
POU5F1.p2	1.229	Pou5f1
TGIF1.p2	1.220	Tgif1
MEF2{A,B,C,D}.p2	1.201	Mef2a Mef2c Mef2d Mef2b
NFATC1..3.p2	1.169	Nfatc3 Nfatc2 Nfatc1
RXR{A,B,G}.p2	1.132	Rxra Rxrb Rxrg
RORA.p2	1.094	Rora
GATA1..3.p2	1.094	Gata1 Gata2 Gata3
NKX3-1.p2	1.078	Nkx3-1
NKX6-1,2.p2	1.014	Nkx6-1 Nkx6-2
FOSL2.p2	1.002	Fosl2
EOMES.p2	0.998	Eomes
UAUUGCU	0.980
AGCAGCG	0.976
HOX{A5,B5}.p2	0.974	Hoxb5 Hoxa5
AAAGUGC	0.900
TAL1_TCF{3,4,12}.p2	0.873	Tcf3 Tcf4 Tal1 Tcf12	$logo of TAL1_TCF{3,4,12}.p2$
GAGAUGA	0.867
IKZF2.p2	0.862	Ikzf2
NANOG.p2	0.858	Nanog
SPZ1.p2	0.816	Spz1
ZNF238.p2	0.800	Zfp238
bHLH_family.p2	0.784	Arntl Mitf Mxi1 Tcfe3 Clock Olig2 Mxd4 Hey2 Hey1 Heyl Mlxipl Hes6 Mxd3 Arntl2 Id1 Mnt Olig1 Npas2
CEBPA,B_DDIT3.p2	0.779	Ddit3 Cebpa Cebpb
UUGGCAA	0.748
NKX3-2.p2	0.726	Nkx3-2
MTF1.p2	0.725	Mtf1
NR5A1,2.p2	0.714	Nr5a1 Nr5a2
AAUACUG	0.696
GGCAGUG	0.668
HIC1.p2	0.667	Hic1
ACAGUAC	0.663
UUUUUGC	0.636
PRRX1,2.p2	0.632	Prrx2 Prrx1
GGCUCAG	0.624
DMAP1_NCOR{1,2}_SMARC.p2	0.605	Smarca1 Smarcc2 Smarca5 Ncor1 Ncor2 Dmap1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
GAGAACU	0.602
CRX.p2	0.601	Crx
GFI1B.p2	0.587	Gfi1b
GUAAACA	0.583
GAUUGUC	0.579
UCCCUUU	0.574
FOX{D1,D2}.p2	0.567	Foxd2 Foxd1
HMGA1,2.p2	0.559	Hmga1 Hmga2
NR1H4.p2	0.545	Nr1h4
NKX2-1,4.p2	0.541	Nkx2-1 Nkx2-4
T.p2	0.540	T
AUUGCAC	0.539
MSX1,2.p2	0.509	Msx1 Msx2
NHLH1,2.p2	0.501	Nhlh1 Nhlh2
AAGGUGC	0.487
AGUGCAA	0.475
FOXP3.p2	0.473	Foxp3
AAGUGCU	0.441
UGCAUUG	0.433
UCACAGU	0.432
FOS_FOS{B,L1}_JUN{B,D}.p2	0.413	Fos Junb Fosl1 Jund Fosb	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
UUGGUCC	0.412
AACAGUC	0.393
TFAP2{A,C}.p2	0.387	Tcfap2c Tcfap2a
MYBL2.p2	0.382	Mybl2
HAND1,2.p2	0.375	Hand1 Hand2
RXRA_VDR{dimer}.p2	0.370	Vdr	$logo of RXRA_VDR{dimer}.p2$
CGUGUCU	0.368
PPARG.p2	0.359	Pparg
NFIX.p2	0.354	Nfix
TFAP4.p2	0.350	Tcfap4
EGR1..3.p2	0.349	Egr3 Egr1 Egr2
FEV.p2	0.328	Fev
GTF2A1,2.p2	0.322	Gtf2a1 Gtf2a2
TP53.p2	0.322	Trp53
ALX1.p2	0.312	Alx1
NR6A1.p2	0.286	Nr6a1
IKZF1.p2	0.285	Ikzf1
UAAUGCU	0.276
VSX1,2.p2	0.275	Vsx2 Vsx1
AACCUGG	0.265
PAX2.p2	0.250	Pax2
AGGUAGU	0.238
LEF1_TCF7_TCF7L1,2.p2	0.234	Tcf7 Tcf7l2 Lef1 Tcf7l1
UGACCUA	0.224
AUGACAC	0.204
UAAGACU	0.204
ACAUUCA	0.187
UUGUUCG	0.181
NFIL3.p2	0.178	Nfil3
AUGGCUU	0.175
PAX5.p2	0.160	Pax5
UGAAAUG	0.160
SRF.p3	0.146	Srf
GAUAUGU	0.145
PAX6.p2	0.131	Pax6
AAUGCCC	0.129
FOXA2.p3	0.121	Foxa2
ATF6.p2	0.116	Atf6
AAUCUCA	0.114
GGCAAGA	0.109
ACCCUGU	0.106
CCUUCAU	0.101
ACUGCAU	0.092
UGUGCGU	0.063
UAAGACG	0.060
PAX4.p2	0.060	Pax4
POU3F1..4.p2	0.058	Pou3f1 Pou3f3 Pou3f2 Pou3f4
CUX2.p2	0.057	Cux2
AAUCUCU	0.057
PAX8.p2	0.053	Pax8
GAUCAGA	0.051
ZIC1..3.p2	0.045	Zic1 Zic2 Zic3
HNF1A.p2	0.034	Hnf1a
AACGGAA	0.030
EBF1.p2	0.025	Ebf1
ADNP_IRX_SIX_ZHX.p2	0.014	Six5 Zhx1 Irx4 Adnp Zhx3 Zhx2 Irx5 Six2
CCAGUGU	0.014
GZF1.p2	0.006	Gzf1
ACCCGUA	0.004
GUGCAAA	0.004
AGCUUAU	-0.009
GUAACAG	-0.024
NANOG{mouse}.p2	-0.024	Nanog
CGUACCG	-0.025
CUCCCAA	-0.038
PAX3,7.p2	-0.040	Pax7 Pax3
GATA6.p2	-0.041	Gata6
AACCGUU	-0.053
BACH2.p2	-0.054	Bach2
FOX{I1,J2}.p2	-0.055	Foxi1 Foxj2
STAT1,3.p3	-0.057	Stat1 Stat3
SPI1.p2	-0.065	Sfpi1
PDX1.p2	-0.081	Pdx1
HOXA9_MEIS1.p2	-0.091	Meis1 Hoxa9
AACACUG	-0.096
CAGCAGG	-0.106
UUGGCAC	-0.109
FOX{C1,C2}.p2	-0.118	Foxc1 Foxc2
CDX1,2,4.p2	-0.120	Cdx1 Cdx2 Cdx4
NR3C1.p2	-0.124	Nr3c1
GCUACAU	-0.124
EWSR1-FLI1.p2	-0.130	Fli1 Ewsr1
HMX1.p2	-0.131	Hmx1
UCCAGUU	-0.131
LMO2.p2	-0.147	Lmo2
RXRG_dimer.p3	-0.158	Nr1h2 Rxra Pparg Ppara Rxrb Rxrg
GGACGGA	-0.159
CUACAGU	-0.165
LHX3,4.p2	-0.170	Lhx3 Lhx4
HSF1,2.p2	-0.183	Hsf1 Hsf2
GGAGUGU	-0.194
GUCAGUU	-0.194
CCAGCAU	-0.206
PRDM1.p3	-0.210	Prdm1
ACUGGCC	-0.217
NFE2.p2	-0.236	Nfe2
FOXO1,3,4.p2	-0.240	Foxo1 Foxo4 Foxo3
AGUGGUU	-0.250
TFAP2B.p2	-0.265	Tcfap2b
POU1F1.p2	-0.267	Pou1f1
KLF4.p3	-0.268	Klf4
GGAAGAC	-0.306
AIRE.p2	-0.318	Aire
NFKB1_REL_RELA.p2	-0.341	Rela Rel Nfkb1
ATF5_CREB3.p2	-0.343	Atf5 Creb3
CDC5L.p2	-0.385	Cdc5l
MAZ.p2	-0.399	Maz
CACAGUG	-0.410
AR.p2	-0.420	Ar
ACAGUAU	-0.441
AUGGCAC	-0.468
CUUUGGU	-0.479
NFE2L2.p2	-0.500	Nfe2l2
XBP1.p3	-0.505	Xbp1
TEAD1.p2	-0.559	Tead1 Tead2 Tead3 Tead4
RFX1..5_RFXANK_RFXAP.p2	-0.568	Rfx1 Rfxap Rfx5 Rfxank Rfx4 Rfx3 Rfx2
NKX2-3_NKX2-5.p2	-0.577	Nkx2-5 Nkx2-3
CAGUGCA	-0.590
GCAGCAU	-0.620
POU5F1_SOX2{dimer}.p2	-0.681	Pou5f1 Sox2	$logo of POU5F1_SOX2{dimer}.p2$
ZBTB16.p2	-0.730	Zbtb16
PATZ1.p2	-0.740	Patz1
ZNF423.p2	-0.743	Zfp423
UCACAUU	-0.760
HBP1_HMGB_SSRP1_UBTF.p2	-0.778	Hmgb2 Hmgb3 Ssrp1 Ubtf Hbp1
STAT5{A,B}.p2	-0.784	Stat5b Stat5a
ZNF148.p2	-0.851	Zfp148
AGCACCA	-0.918
CCCUGAG	-0.921
GUAGUGU	-0.923
AGCAGCA	-1.027
FOXD3.p2	-1.033	Foxd3
ESRRA.p2	-1.145	Esrra
FOX{F1,F2,J1}.p2	-1.151	Foxf2 Foxj1 Foxf1a
ATF2.p2	-1.158	Atf2
UCAAGUA	-1.207
SREBF1,2.p2	-1.218	Srebf1 Srebf2
HNF4A_NR2F1,2.p2	-1.260	Nr2f1 Nr2f2 Hnf4a
EP300.p2	-1.270	Ep300
HES1.p2	-1.280	Hes1
TFCP2.p2	-1.286	Tcfcp2
AGCUGCC	-1.411
GGAAUGU	-1.418
AAGGCAC	-1.472
RBPJ.p2	-1.481	Rbpj
PBX1.p2	-1.568	Pbx1
FOXN1.p2	-1.648	Foxn1
POU2F1..3.p2	-1.702	Pou2f2 Pou2f1 Pou2f3
TFEB.p2	-1.772	Tcfeb
HLF.p2	-1.788	Hlf
SOX2.p2	-1.833	Sox2
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-1.838	Arnt Max Myc Usf1 Bhlhe40 Arnt2
HIF1A.p2	-1.957	Hif1a
PITX1..3.p2	-1.959	Pitx2 Pitx3 Pitx1
ESR1.p2	-2.017	Esr1
MYB.p2	-2.054	Myb
SOX17.p2	-2.065	Sox17
GAGGUAG	-2.085
CTCF.p2	-2.289	Ctcf
TLX2.p2	-2.659	Tlx2
GFI1.p2	-2.719	Gfi1
TBP.p2	-2.728	Tbp
SP1.p2	-2.764	Sp1
STAT2,4,6.p2	-2.767	Stat2 Stat4 Stat6
SOX{8,9,10}.p2	-2.845	Sox9 Sox8 Sox10
CREB1.p2	-3.399	Creb1
ATF4.p2	-3.768	Atf4
E2F1..5.p2	-4.101	E2f4 E2f5 E2f2 E2f1 E2f3
ELF1,2,4.p2	-4.609	Elf2 Elf1 Elf4
EHF.p2	-4.801	Ehf
ZNF143.p2	-5.873	Zfp143
NFY{A,B,C}.p2	-6.986	Nfyc Nfyb Nfya
YY1.p2	-7.284	Yy1
ELK1,4_GABP{A,B1}.p3	-8.296	Gabpa Gabpb1 Elk4 Elk1	$logo of ELK1,4_GABP{A,B1}.p3$
NRF1.p2	-9.164	Nrf1

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Sample name: cerebellum, embryo E18, biol_rep3 (E18R3)

Sorted z-values for every WM.